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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18577123_18601854_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
18577123 - 18601854
Intron Length:
24732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTATTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTACTTTTATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
54.7
0.11
1.8
66.4
44.3
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
59.4
0.15
1.7
67.83
40

Associated Gene:

Gene:
KCNK2
Ensembl Gene ID:
ENSAPLG00000009845
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041429
18575758 - 18704220
128463
ENSAPLT00000037951
18576966 - 18704220
127255
ENSAPLT00000021005
18576304 - 18704220
127917