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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18631419_18644523_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18631419 - 18644523
Intron Length:
13105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCAT
5'SS Class:
major
3'SS Sequence:
TTTAAACTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTAAACT
Flanking Amino Acid:
*MQQSLMN*FSK*WQQ*MQE
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
70.7
41.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.1
0.63
0.9
70.8
39.6
Minor 5ss
39.6
-1.2
3.1
56.4
47.8
Minor BPS
67.3
0.62
1.6
82.56
39.6

Associated Gene:

Gene:
KCNK2
Ensembl Gene ID:
ENSAPLG00000009845
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041429
18575758 - 18704220
128463
ENSAPLT00000037951
18576966 - 18704220
127255
ENSAPLT00000010253
18629563 - 18704220
74658