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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18644642_18676990_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18644642 - 18676990
Intron Length:
32349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGACAC
5'SS Class:
major
3'SS Sequence:
GTTTGTAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAAGC
Flanking Amino Acid:
SLLALLLPP*ALETSPHAHK
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
66
40.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
70.1
0.45
1
67.8
42.7
Minor 5ss
30.9
-2.2
3.3
41.2
45.5
Minor BPS
65.6
0.47
1.6
72.92
38.9

Associated Gene:

Gene:
KCNK2
Ensembl Gene ID:
ENSAPLG00000009845
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010253
18629563 - 18704220
74658
ENSAPLT00000041429
18575758 - 18704220
128463
ENSAPLT00000037951
18576966 - 18704220
127255