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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18677152_18680544_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18677152 - 18680544
Intron Length:
3393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTTCTTTCATA
Flanking Amino Acid:
KELPK*KIPSLNGM*VRQRF
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
72.6
38.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.3
0.75
0.7
79.7
25.9
Minor 5ss
36.5
-1.5
2.9
48.4
41.7
Minor BPS
64.3
0.44
1.7
74.34
38.4

Associated Gene:

Gene:
KCNK2
Ensembl Gene ID:
ENSAPLG00000009845
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037951
18576966 - 18704220
127255
ENSAPLT00000010253
18629563 - 18704220
74658
ENSAPLT00000041429
18575758 - 18704220
128463