Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18680732_18685623_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18680732 - 18685623

Intron Length:

4892

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGATTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTATAT

U12 Branch Point Sequence:

CCAACATTATAT

Flanking Amino Acid:

LPLDLVTMLQMVQMLSCPQH

Intron Amino Acid Position:

260

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.2

1.04

0.7

90.6

21.2

Major BPS

70.4

0.51

67.1

39.4

Major PPT

92.3

0.95

0.6

88.3

21.5

Minor 5ss

43.9

-0.7

3.2

64.8

46.5

Minor BPS

43.8

-0.3

1.9

56.12

45.4

Associated Gene:

Gene:

KCNK2

Ensembl Gene ID:

ENSAPLG00000009845

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010253

18629563 - 18704220

74658

ENSAPLT00000037951

18576966 - 18704220

127255