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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18685810_18688949_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18685810 - 18688949
Intron Length:
3140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCAT
5'SS Class:
major
3'SS Sequence:
CATTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTATTCTTAACT
Flanking Amino Acid:
LDYASCPWCQGDQILST*IF
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
71.7
39.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
83.5
0.75
0.8
80.5
36.7
Minor 5ss
38.3
-1.3
2.8
50.3
46
Minor BPS
88.4
1.28
0.9
96.66
27.9

Associated Gene:

Gene:
KCNK2
Ensembl Gene ID:
ENSAPLG00000009845
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037951
18576966 - 18704220
127255
ENSAPLT00000010253
18629563 - 18704220
74658