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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18689090_18703896_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18689090 - 18703896
Intron Length:
14807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTTCTCATTT
Flanking Amino Acid:
*ESYQKRQRKR*GNSEPMLR
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.1
0.75
0.9
77.8
36
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
55.5
0.25
1.8
75.31
42.2

Associated Gene:

Gene:
KCNK2
Ensembl Gene ID:
ENSAPLG00000009845
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010253
18629563 - 18704220
74658
ENSAPLT00000041429
18575758 - 18704220
128463
ENSAPLT00000037951
18576966 - 18704220
127255