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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18722173_18728799_F

Intron Information:

Intron Rank:
142782
Intron Class:
major
Intron Phase:
Intron Coordinates:
18722173 - 18728799
Intron Length:
6627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGTTTTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
100
1.24
0.5
100
0
Major PPT
89.4
0.89
0.7
81.6
35
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
48.2
-0
1.7
65.49
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026989
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022930
18721980 - 18739511
17532