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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18794101_18795542_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18794101 - 18795542
Intron Length:
1442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
GGACATCTAACA
Flanking Amino Acid:
LMWIPDSFFSSLLSGRISTL
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
83.1
0.74
0.8
76.8
37.4
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
45.6
-0.3
1.8
53.69
37.4

Associated Gene:

Gene:
KCTD3
Ensembl Gene ID:
ENSAPLG00000009311
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020686
18790933 - 18915318
124386
ENSAPLT00000009725
18790933 - 18815544
24612