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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18797949_18798617_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18797949 - 18798617
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTG
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
VLFHGYLPPPGIPSRKINNN
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.3
38.2
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
91.5
0.93
0.6
88
22
Minor 5ss
50
0
2.4
66.9
44.3
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
KCTD3
Ensembl Gene ID:
ENSAPLG00000009311
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020686
18790933 - 18915318
124386