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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18797949_18799682_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18797949 - 18799682
Intron Length:
1734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTG
5'SS Class:
major
3'SS Sequence:
TTGTTGGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CATTGTTTGACT
Flanking Amino Acid:
VLFHGYLPPPGFPVDPRKVL
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.3
38.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
75.6
0.58
1
73.5
41.9
Minor 5ss
50
0
2.4
66.9
44.3
Minor BPS
59.8
0.39
1.8
75.39
41.9

Associated Gene:

Gene:
KCTD3
Ensembl Gene ID:
ENSAPLG00000009311
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009725
18790933 - 18815544
24612