Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18810409_18811575_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18810409 - 18811575

Intron Length:

1167

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATCTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCTTTCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

TGTTACTGTACA

Flanking Amino Acid:

IMLSEKHLVSVCADNNHVRT

Intron Amino Acid Position:

385

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

80.7

34.7

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

88.1

0.86

0.6

81.5

30.4

Minor 5ss

49.9

-0

2.8

73.7

42.8

Minor BPS

52.2

0.06

70.51

40.7

Associated Gene:

Gene:

KCTD3

Ensembl Gene ID:

ENSAPLG00000009311

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020686

18790933 - 18915318

124386

ENSAPLT00000009725

18790933 - 18815544

24612