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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18815370_18915033_F

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
18815370 - 18915033
Intron Length:
99664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTTGAAGG
5'SS Class:
weak_major
3'SS Sequence:
CTTCTGAAAGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTCTTCTGAAAG
Flanking Amino Acid:
EAKAESKKKTGNKVNSLTCQ
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.8
0.23
1.2
51.1
45.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
47
-0.1
1.7
52.2
40.6
Minor 5ss
34.9
-1.7
2.6
33.4
41.5
Minor BPS
59.3
0.15
1.7
65.14
42.5

Associated Gene:

Gene:
KCTD3
Ensembl Gene ID:
ENSAPLG00000009311
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020686
18790933 - 18915318
124386