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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18817199_18817965_R

Intron Information:

Intron Rank:
70
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18817199 - 18817965
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCCTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
TTTGACTTACAT
Flanking Amino Acid:
RNHRTGGRGLYADEEDLVNV
Intron Amino Acid Position:
5170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.3
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
70.1
0.45
0.9
64.8
29.3
Minor 5ss
35
-1.7
3.2
47
42.5
Minor BPS
53.4
0.18
2
78.16
43.8

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218