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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18818200_18820457_R

Intron Information:

Intron Rank:
69
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18818200 - 18820457
Intron Length:
2258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGTTGG
5'SS Class:
major
3'SS Sequence:
TTCTTTCCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTTCTTTCCACT
Flanking Amino Acid:
SVYSTGETHPGLEDTKIPGA
Intron Amino Acid Position:
5092

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
61
46.2
Major BPS
73.9
0.59
1
81
30.2
Major PPT
76.2
0.59
0.8
71.3
34.5
Minor 5ss
38.7
-1.3
3.1
49.1
47.1
Minor BPS
50.4
0.09
2
76.97
39.8

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218