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Intron Name: Anas_platyrhynchos_platyrhynchos_3_18820703_18822308_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18820703 - 18822308

Intron Length:

1606

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAACTATG

5'SS Class:

major

3'SS Sequence:

TTAATTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TTTGTCTTAATT

Flanking Amino Acid:

VIKYSAGDGLGLILTTPGEK

Intron Amino Acid Position:

5010

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.61

1.2

74.5

41.9

Major BPS

0.92

0.9

86.2

29.1

Major PPT

85.5

0.8

80.1

37.1

Minor 5ss

-0.5

2.6

56.8

41.9

Minor BPS

79.6

1.01

1.2

91.07

32.9

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218