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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18822393_18823593_R

Intron Information:

Intron Rank:
67
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18822393 - 18823593
Intron Length:
1201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTCAGTTTC
5'SS Class:
major
3'SS Sequence:
CCTTTTTGCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
ATTTTCCAACCT
Flanking Amino Acid:
ELYLPRTSDKTFLFQVTCIT
Intron Amino Acid Position:
4982

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
76
34.8
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
79.8
0.67
0.9
79.6
32.4
Minor 5ss
41.9
-0.9
2.8
53.8
37.2
Minor BPS
47.5
-0.1
2.2
74.35
42.6

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218