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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18823771_18825346_R

Intron Information:

Intron Rank:
66
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18823771 - 18825346
Intron Length:
1576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
CCTTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGAAAT
U12 Branch Point Sequence:
TTTTCCTTCTTT
Flanking Amino Acid:
EWVGFTTEKEPPRYMAPFSV
Intron Amino Acid Position:
4923

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.3
72.7
44.5
Major BPS
59.4
0.23
1.2
65.3
38.6
Major PPT
88.3
0.86
0.7
83.5
24.7
Minor 5ss
40.3
-1.1
2.8
47
41.7
Minor BPS
48.4
-0
3.6
87.57
38.6

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218