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Intron Name: Anas_platyrhynchos_platyrhynchos_3_18825565_18826131_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18825565 - 18826131

Intron Length:

567

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAGTG

5'SS Class:

strong_major

3'SS Sequence:

ACTTTCTTCTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTCAA

U12 Branch Point Sequence:

GATTACTCAAAA

Flanking Amino Acid:

APQSPNGIVTSYELHVYMAC

Intron Amino Acid Position:

4850

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

69.9

41.1

Major BPS

77.9

0.69

0.8

77.9

25.8

Major PPT

82.9

0.74

0.8

80.8

30.4

Minor 5ss

32.6

-2

3.7

46.1

49.1

Minor BPS

51.7

0.05

1.8

64.87

40.3

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218