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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18826371_18828605_R

Intron Information:

Intron Rank:
64
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18826371 - 18828605
Intron Length:
2235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTAATTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCCCTCTTAATT
Flanking Amino Acid:
SNDTRGNEVVLSEGTATQQT
Intron Amino Acid Position:
4771

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
85.5
0.8
0.8
80.1
37.1
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
69.5
0.69
1.2
76.4
40.9

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218