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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18828816_18839821_R

Intron Information:

Intron Rank:
63
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18828816 - 18839821
Intron Length:
11006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGATAG
5'SS Class:
major
3'SS Sequence:
TCGTGTGCCGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
GGCTCCTTCACT
Flanking Amino Acid:
LMPYTEYEYQVWSVNSAGRT
Intron Amino Acid Position:
4701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
64.7
37.9
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
56
0.14
1.1
55.8
39.2
Minor 5ss
30.4
-2.2
3.2
37
47.6
Minor BPS
65.9
0.58
1.8
77.47
44.6

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218