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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18840144_18841125_R

Intron Information:

Intron Rank:
62
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18840144 - 18841125
Intron Length:
982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTCCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTTCCTGATTT
Flanking Amino Acid:
YIVAGLEPYSRYEVQLQACT
Intron Amino Acid Position:
4593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
63.4
0.3
1.1
60.8
40.6
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
63.9
0.51
1.7
81.89
39.5

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218