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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18868883_18874755_R

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18868883 - 18874755
Intron Length:
5873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GATTTCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGCTTTTGATT
Flanking Amino Acid:
NGIITNYFIHRRPVGSQEEL
Intron Amino Acid Position:
3893

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.7
0.65
0.9
74.8
39.5
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
62.6
0.48
1.2
75.19
36.2

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218