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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18876272_18883360_R

Intron Information:

Intron Rank:
57
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18876272 - 18883360
Intron Length:
7089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TGTTTCACAACA
Flanking Amino Acid:
YSMFLAWDTPGIFAVSTPLE
Intron Amino Acid Position:
3784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
74.1
0.6
1
69
38.9
Major PPT
72.7
0.51
1
67.7
37.7
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
57.5
0.23
1.8
73.44
37.8

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218