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Intron Name: Anas_platyrhynchos_platyrhynchos_3_18883519_18884208_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18883519 - 18884208

Intron Length:

690

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGGCAT

5'SS Class:

strong_major

3'SS Sequence:

TGTGTTTGCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

GTCTACTGATCT

Flanking Amino Acid:

FTDVNLQPNSRYVYQLEAST

Intron Amino Acid Position:

3731

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.9

78.6

37.2

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

73.3

0.52

68.8

41.9

Minor 5ss

32.4

-2

3.4

46.7

48.6

Minor BPS

49.6

0.05

1.9

70.91

45.3

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218