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Intron Name: Anas_platyrhynchos_platyrhynchos_3_18885027_18890488_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18885027 - 18890488

Intron Length:

5462

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAGG

5'SS Class:

strong_major

3'SS Sequence:

TCGCTCTTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTCAT

U12 Branch Point Sequence:

ATTCATCTAACC

Flanking Amino Acid:

TGSKMQHTVSGLQPYTNYSF

Intron Amino Acid Position:

3634

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

79.8

0.74

0.9

81.3

29.9

Major PPT

76.8

0.6

0.8

69.3

36.9

Minor 5ss

31.7

-2.1

3.1

39.7

45.9

Minor BPS

0.04

1.8

68.38

36.3

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218