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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18890688_18892499_R

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18890688 - 18892499
Intron Length:
1812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CATATGTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATTACATTAAAT
Flanking Amino Acid:
TVAGCTDSSKVVAVTVQGVP
Intron Amino Acid Position:
3568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1.1
78.8
30.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
74.1
0.54
1
69.7
41.1
Minor 5ss
28.4
-2.5
2.9
32.1
42.4
Minor BPS
64.1
0.52
1.7
82.45
37.7

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218