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Intron Name: Anas_platyrhynchos_platyrhynchos_3_18892655_18893191_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

18892655 - 18893191

Intron Length:

537

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATTGTTA

5'SS Class:

weak_major

3'SS Sequence:

CTTTCTGTAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAG

U12 Branch Point Sequence:

CTTTCTGTAATA

Flanking Amino Acid:

LNWEEPLQPNGLIIHYIILR

Intron Amino Acid Position:

3516

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.7

0.37

1.1

37.5

Major BPS

0.52

1.5

79.6

35.6

Major PPT

72.8

0.51

0.9

69.5

35.5

Minor 5ss

46.6

-0.3

3.1

61.2

45.6

Minor BPS

61.2

0.35

74.34

38.4

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218