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Intron Name: Anas_platyrhynchos_platyrhynchos_3_18893972_18896456_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

18893972 - 18896456

Intron Length:

2485

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTGAT

5'SS Class:

strong_major

3'SS Sequence:

AGAAGAATGCAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

TATTCCATAGGT

Flanking Amino Acid:

DKISAGMMMKANILCPLSME

Intron Amino Acid Position:

3386

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

83.3

28.2

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

43.5

-0.3

1.2

28.2

40.1

Minor 5ss

34.4

-1.8

3.3

49.3

46.9

Minor BPS

52.8

0.17

2.1

78.47

43.3

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218