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Intron Name: Anas_platyrhynchos_platyrhynchos_3_18896681_18902111_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18896681 - 18902111

Intron Length:

5431

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

TTGTTGTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTACAT

U12 Branch Point Sequence:

ATATTCAGATAT

Flanking Amino Acid:

EKGTSHRPLTGMFCCGQEYV

Intron Amino Acid Position:

3311

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.8

1.06

0.7

81.4

32.7

Major BPS

73.9

0.59

30.2

Major PPT

86.6

0.82

0.8

84.6

Minor 5ss

-2.1

3.1

39.6

46.4

Minor BPS

43.2

-0.4

1.9

62.57

40.7

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218