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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18915491_18920562_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18915491 - 18920562
Intron Length:
5072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTATGC
5'SS Class:
major
3'SS Sequence:
CTGCTTATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATAATTTAACA
Flanking Amino Acid:
AAPIIHVIGSRSLQINWVSP
Intron Amino Acid Position:
3116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
59.9
40.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74.9
0.56
0.9
70
35.1
Minor 5ss
37.3
-1.4
3.2
51.5
45
Minor BPS
61.9
0.37
1.5
69.12
36.4

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218