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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18920676_18922529_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18920676 - 18922529
Intron Length:
1854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTCTTCTTCATC
Flanking Amino Acid:
LSPFTVYNIQIEACTVYACV
Intron Amino Acid Position:
3079

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.1
82
30.9
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
81.8
0.72
0.8
82
28.4
Minor 5ss
33.4
-1.9
2.9
41
44.9
Minor BPS
63.3
0.4
1.7
73.1
38.8

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218