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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18922733_18924163_R

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18922733 - 18924163
Intron Length:
1431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTTAG
5'SS Class:
major
3'SS Sequence:
CCTTTATTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTTAT
U12 Branch Point Sequence:
TCTTCCTTTATT
Flanking Amino Acid:
EVVRVTTSDGEPEGMFPPEV
Intron Amino Acid Position:
3011

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
67
41
Major BPS
72.5
0.56
1.1
63.4
44
Major PPT
80.9
0.7
0.8
73.4
36.1
Minor 5ss
34.5
-1.8
2.9
40.4
45.9
Minor BPS
75.4
0.88
1.5
87.87
37.8

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218