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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18924374_18926451_R

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18924374 - 18926451
Intron Length:
2078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTGAT
U12 Branch Point Sequence:
TATCTCTTAGTT
Flanking Amino Acid:
TAVEVEWSKPTLQDLQGDVM
Intron Amino Acid Position:
2941

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
72.4
0.56
1.1
63.1
44.4
Major PPT
88.7
0.87
0.6
88
21.8
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
63.6
0.5
1.5
78.43
37.8

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218