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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18926616_18929296_R

Intron Information:

Intron Rank:
42
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
18926616 - 18929296
Intron Length:
2681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TAAAATGTCTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAA
Flanking Amino Acid:
QWFYEDKGLSRYTTYEYKLI
Intron Amino Acid Position:
2886

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.9
23.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
58.7
0.2
1
54.9
44.8
Minor 5ss
36.1
-1.6
3.2
46.9
48.4
Minor BPS
71.1
0.66
1.3
76.99
33.4

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218