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Intron Name: Anas_platyrhynchos_platyrhynchos_3_18929420_18931741_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18929420 - 18931741

Intron Length:

2322

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTGTGTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGATAAT

U12 Branch Point Sequence:

GTTGAGATAATC

Flanking Amino Acid:

PPLRPNGPHLRYELLRRKIQ

Intron Amino Acid Position:

2845

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.4

0.8

87.9

29.3

Major BPS

63.8

0.34

1.2

64.1

39.8

Major PPT

75.3

0.57

76.9

37.3

Minor 5ss

49.8

-0

2.8

73.2

43.7

Minor BPS

41.9

-0.6

2.4

56.87

41.8

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218