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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18932077_18942022_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18932077 - 18942022
Intron Length:
9946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTGACTGTAAGT
Flanking Amino Acid:
AEVLGPHSVKVSWKPPLIQN
Intron Amino Acid Position:
2734

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.2
35.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.7
0.76
0.7
81.1
24
Minor 5ss
32.6
-2
3.7
46.4
48.9
Minor BPS
45.5
-0.2
2.3
63.57
47.1

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218