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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18942652_18951774_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18942652 - 18951774
Intron Length:
9123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCAGT
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTTTCTGTTACA
Flanking Amino Acid:
DWTSMTTAEDKPGPLDPPLV
Intron Amino Acid Position:
2524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66.8
44.5
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
88.8
0.87
0.8
83.7
31.3
Minor 5ss
43.3
-0.7
2.9
63.4
41.9
Minor BPS
57.4
0.23
2.3
78.96
37.6

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218