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Intron Name: Anas_platyrhynchos_platyrhynchos_3_18951918_18952093_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18951918 - 18952093

Intron Length:

176

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTACGCAGA

5'SS Class:

major

3'SS Sequence:

CTTTTCTTCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTAAA

U12 Branch Point Sequence:

GGATGTTTAAAG

Flanking Amino Acid:

RRRHSAGDILELLSSPTASL

Intron Amino Acid Position:

2476

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.24

1.2

53.7

45.3

Major BPS

72.6

0.56

1.2

75.9

36.3

Major PPT

88.1

0.86

0.6

84.1

23.9

Minor 5ss

38.9

-1.2

3.1

44.4

Minor BPS

47.9

-0.3

1.9

51.11

42.7

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218