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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18952245_18972700_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18952245 - 18972700
Intron Length:
20456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTCGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCTGCTCTAATT
Flanking Amino Acid:
DAITIVMPPGAPDGVMPPRL
Intron Amino Acid Position:
2426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
75.4
0.57
1
72.2
38
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
58.1
0.33
1.8
75.83
41.7

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218