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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18972881_18990299_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18972881 - 18990299
Intron Length:
17419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCTTAACA
Flanking Amino Acid:
FVTGLFYADQADSNYSVVNG
Intron Amino Acid Position:
2366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
82.4
30.8
Major BPS
100
1.24
0.5
100
0
Major PPT
87.9
0.85
0.8
85.2
28
Minor 5ss
58.1
0.27
2.3
76
39.6
Minor BPS
91.6
1.3
0.7
95.02
20.5

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218