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Intron Name: Anas_platyrhynchos_platyrhynchos_3_18990463_18994456_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18990463 - 18994456

Intron Length:

3994

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTACA

5'SS Class:

strong_major

3'SS Sequence:

GTTGAATTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAATAAA

U12 Branch Point Sequence:

CATGGTTGAATT

Flanking Amino Acid:

TAKGCALGPLVEARTMEAAP

Intron Amino Acid Position:

2312

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.82

0.8

78.5

30.1

Major BPS

58.5

0.21

1.1

59.9

32.5

Major PPT

69.6

0.44

61.5

43.4

Minor 5ss

30.7

-2.2

2.5

31.6

35.9

Minor BPS

-0.2

1.9

61.09

43.5

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218