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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18994609_19001599_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18994609 - 19001599
Intron Length:
6991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
TGTTGTTTTATA
Flanking Amino Acid:
ISWAKPEYPNGIITSYGLYM
Intron Amino Acid Position:
2261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
81.7
0.71
0.8
76.5
37.7
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
50.5
0.01
2
67.32
39.4

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218