Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19001748_19005121_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19001748 - 19005121

Intron Length:

3374

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTTTT

5'SS Class:

major

3'SS Sequence:

TTCATATTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

TTGTGCTTCATA

Flanking Amino Acid:

PGTEYLVKLAACTGGGCSIS

Intron Amino Acid Position:

2212

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

1.1

81.2

33.5

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

72.3

0.5

1.1

75.8

37.3

Minor 5ss

-0.1

2.8

77.2

37.5

Minor BPS

53.6

0.11

2.2

70.56

42.6

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218