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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19005294_19005783_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19005294 - 19005783
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
CTTTTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTGGTCTTAATC
Flanking Amino Acid:
TVLDSRTIYVQWNEPIEVNG
Intron Amino Acid Position:
2154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72
39.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
89.7
0.89
0.7
84.8
28.7
Minor 5ss
37.3
-1.4
2.8
48.1
41.6
Minor BPS
69.7
0.6
1.4
73.21
38.6

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218