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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19005944_19027326_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19005944 - 19027326
Intron Length:
21383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAAATTTGCATT
Flanking Amino Acid:
FGNGTQYVVKDLAVFTPHQF
Intron Amino Acid Position:
2101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
23.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.7
0.67
0.8
73.8
36.8
Minor 5ss
37.4
-1.4
2.9
50.4
46
Minor BPS
43.6
-0.4
1.8
58.98
38.4

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218