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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19027489_19030088_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19027489 - 19030088
Intron Length:
2600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAA
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCTAATATAAAT
Flanking Amino Acid:
HALNISTPQEAPEDVQPATA
Intron Amino Acid Position:
2047

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.3
31.9
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
74.2
0.54
1
67.7
42.8
Minor 5ss
35.4
-1.7
3.3
46.2
49.1
Minor BPS
47.3
-0.1
1.9
68.06
42.2

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218