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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19030203_19044931_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19030203 - 19044931
Intron Length:
14729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
ACATGCATAACA
Flanking Amino Acid:
AELADTTMLTGILTGLHPFT
Intron Amino Acid Position:
2009

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
85.1
0.79
0.8
80.1
31.8
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
50.2
0
2
63.64
42.3

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218