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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19045118_19047509_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19045118 - 19047509
Intron Length:
2392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
TATCCTTCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTCTATTT
Flanking Amino Acid:
VWTHVRTRESVPQNVPTPSR
Intron Amino Acid Position:
1947

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.4
0.64
0.8
73.3
31.2
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
60.6
0.41
1.9
84.33
36.8

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218