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Intron Name: Anas_platyrhynchos_platyrhynchos_3_19047591_19047723_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19047591 - 19047723

Intron Length:

133

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACACAT

5'SS Class:

major

3'SS Sequence:

GTTTTCTTTGAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCTT

U12 Branch Point Sequence:

TTTTCTTTGAAG

Flanking Amino Acid:

VYENGLQPFTEYLYRVVASN

Intron Amino Acid Position:

1920

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

1.1

71.6

40.1

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

78.2

0.64

79.4

32.9

Minor 5ss

39.2

-1.2

3.2

56.5

47.6

Minor BPS

70.8

0.51

1.4

75.57

36.2

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218